jenkins at aidsun.nibsc.ac.uk wrote:
: I have copied from the states the Los-Alamos hiv dbase (embl format).
: Using fromembl (unix flavour, SGI machine) I broke the flat file into
: individual protein sequences.
: The output files containid "$" in the name eg env$u445.embl. My flavour
: of unix will not recognise this dollar symbol, so i can't do anything
: with these sequences.
I would suppose that you have troubles with the $ because it is a special
sign for almost all unix shells, designating a shell variable.
There are two ways to circumvent this.
1) You can force the shell to recognize the $ sign by putting a backslash
in front of it, e.g. env\$u445.embl instead of env$u445.embl.
2) You can quote the name of the file in single quotes, e.g.
'env$u445.embl' instead of 'env$u445.embl'.
Hope that helps,
PS: You would make some people happy by using not more than 80 chars/line :-)
/* Cornelius Krasel, Abt. Lohse, Genzentrum, D-82152 Martinsried, Germany */
/* email: krasel at alf.biochem.mpg.de fax: +49 89 8578 3795 */
/* "People are DNA's way of making more DNA." (Edward O. Wilson, 1975) */