PileUp and Sequence Files

Basavaraju Shankarappa bsh at MED.PITT.EDU
Thu Mar 24 21:14:32 EST 1994

 I think the problem may be the inability of GCG to understand
 the @ command at this level.  I use VMS and the I put all my
 options right on the command line
 $ pileup @seqs.fil /bat /nosort /line=  ...... and so on..
 should work.
 Good luck.
 Raj Shanakarappa
 bsh at med.pitt.edu
 > Hi GCGers,
 > I have just discovered a problemette.
 > If I construct a file of sequence names containing a number of sequences 
> called seqs.fil and in response to 'What sequences' type @seqs.fil Pileup just
 > sits there until I press CTRL Z when it inputs each sequence.  If however I 
 > have all the sequences and in response to 'What sequence' type *.pep it 
 > swallows the sequences straight away.
 > Has anybody else had this problem or am I doing something dumb?
 > (Oh on a VAX 7610 - VMS version 5.5-2 Version 7.3 of Wisconsin Package)
 > Cheers,
 > Tony P.
 > parsons_a at snd01.pcr.co.uk

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