IUBio

Is there a SEQLOGO for Mac?

Basavaraju Shankarappa bsh at MED.PITT.EDU
Tue Mar 8 10:54:43 EST 1994


> During the compilation of the program SEQLOGO, obtained from the
> netserver at EMBL using the program THINK Pascal Version 4.0 we
> received some lethal error messages.
> I asced Tom Schneider at the NCI in Frederick for a compiled 
> version of his program SEQLOGO to generate sequence logos reported 1990 in 
> Nuc. Acids Res. (Vol. 18 No. 20 p. 6097). Unfortunately there seems no
> such version available from his side.
>Is there anybody who could send me, e.g. via e-mail, a compiled version for an 
> Apple computer or could give us some hints for the compilation?
> We would like to run it on a Macintosh Quadra 650.
> Thank you very much in advance!
> Nikolai Baum
> E-Mail: baum at vax.mpiz-koeln.mpg.d400.de 
> Fax.:   0049 221 5062-113

	There is one which is not exactly a seqlogo, but does good justice to
the way the amino acids and nucleic acids are depicted in color and in 
shades.  It is a macro for excel spreadsheets.  Check out BioTechniques
15:1084 Spreadsheet macros for coloring sequence alignments by M.G.\
Haygood (mhaygood at ucsd.edu)
Raj Shankarappa
bsh at med.pitt.edu
Univ of Pittsburgh Sch of Med.




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