Graham Redgrave (gwr at socrates.ucsf.edu) wrote:
: We are interested in finding a sub-optimal RNA folding
: program for RNA molecules longer than 850, specifically able to
: handle at least 25.kb. We have the GCG package, and mfold is
: ideal except for its 850 base limit. Modifying mfold is, I think,
: a possibility for us, though I don't maintain the source code and
: the person who does is currently on leave.
In the GCG directory there is a file called
gcgsource/include/mfoldblock.inc with a maxn variable set to 850. I'm
pretty sure if you change this your limit will go up. I did it for
pileup.
Neal
