Greetings,
We are interested in finding a sub-optimal RNA folding
program for RNA molecules longer than 850, specifically able to
handle at least 25.kb. We have the GCG package, and mfold is
ideal except for its 850 base limit. Modifying mfold is, I think,
a possibility for us, though I don't maintain the source code and
the person who does is currently on leave.
Thanks for any help,
Graham
--
Graham Redgrave, Sequence Analysis Consulting Service
Computer Graphics Lab UCSF email: gwr at cgl.ucsf.edu
Box 0446, Room S926 office: (415) 476-5379
513 Parnassus Avenue San Francisco, CA 94143-0446 fax: (415) 502-1755
