Hi,
I previously used DISTANCES with parameter set to 1.5 to calculate
pairwise identities between sequences in a multiple alignment. In the
new GCG version now installed at our site, this possibility has (as far as I
can tell) disappeared (choice between uncorrected, Jukes-Cantor and
Kimura distances), and the output is the number of substitutions per
100 nucleotides.
Can I still use GCG to do pairwise identities from a MSF alignment in
this version of the program?
Thanks for any suggestions
Stephane
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Stephane Vuilleumier
Mikrobiologisches Institut
ETH-Zurich
ETH-Zentrum/LFV Tel: (+41) 1 632 33 57
8092 Zurich Fax: (+41) 1 632 11 48
Switzerland email: svuilleu at micro.biol.ethz.ch
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