Les Klimczak (lklimcza at sas.upenn.edu) wrote:
> We are looking for a program that will automatically highlight
> identical and similar residues in .msf output files and that will also
> allow further editing and annotation.
> The best program we have found so far is BOXSHADE, but its
> limitation is that the PS output file cannot be easily modified.
The PS output by boxshade can be modified with Adobe Illustrator or
Aldus Freehand. You'll require a _fast_ computer for this since every
letter is handled as a single object, as is every shaded box behind
the letter. A PowerMac 6100 with a native version of one of the programs
mentioned above is fine for sequence alignments which are not longer than
Disclaimer: I am not benefitting in any way from mentioning trademarks :-)
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