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GCG: distances changing gap weights

Neal Dalton nrd at insitu.med.umn.edu
Fri Aug 26 14:49:53 EST 1994


We would like to change the weight given to gaps vs nucleotides when
calculating distances using GCG's distance program.  Currently, gap
mismatches are given the same weight as nucleotide mismatches.

How can we do this?  I tried to add gaps to the dnadistances.cmp table,
but that didn't seem to work.

Also, are there other program for this?

Neal



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