I need to compile a codon bias for a given sequence. I do have own
codon usage tables for my system (prepared with 'codonfrequency' from
the GCG package), and the one for the sequences in question. Can
anyone recommend a method within GCG, or any other PD (?) package,
which gets me a single codon bias value for a defined reading frame?
(This is, not the 'randomized' versus 'real' sequence but the 'real
usage' versus the 'expected' usage).