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Batch sequence editing?

Conrad Halling chhall at bb1t.monsanto.com
Tue Aug 9 19:07:52 EST 1994


In article <31os27INN46up at rs1.rrz.Uni-Koeln.DE>,
a1624091 at athena.rrz.uni-koeln.de (Jan T. Kim) wrote:

> do you know of a program in the package that can be used to do a little
> non-interactive sequence editing? I would like to extract pieces of
> sequences specified by accession number, starting position and length
> from the database; and I'd like to automate that with a command procedure.

You could try using Assemble, which will pull pieces of sequence out
of sequence files.  (I don't know if you can put everything you want to
do on the command line, but check it out.)

-- 
Conrad Halling
Computational Molecular Biologist
Monsanto Co., St. Louis



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