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Reformating GENESEQ for GCG

Peter Rice rice at embl-heidelberg.de
Tue Sep 14 07:48:40 EST 1993


In article <1993Sep14.110611.64 at cnbvx3.cnb.uam.es>, lpezzi at cnbvx3.cnb.uam.es writes:
> 
> I am trying to install the IG GENESEQ database in our system. According to IG,
> the GCG command FromIG shoudl be able to reformat it to be used by GCG.
> 
> However, it is unclear to which of the many data files that came with GENESEQ
> (.ADB, .PDB, etc,) should the FromIG be applied.

The FromIG program will read a file in Ig format: comments with ";" at
the start of each line, then one line with the entry name, then the
sequence with a formfeed at the end. You should have a file in that
kind of format.

You can use ToIg on a few entries (EMBL:ECTRPA* for example) to see the
Ig format.

 -----------------------------------------------------------------------------
 Peter Rice, EMBL                             | Post: Computer Group
                                              |       European Molecular
 Internet:    Peter.Rice at EMBL-Heidelberg.DE   |            Biology Laboratory
                                              |       Postfach 10-2209
 Phone:   +49-6221-387247                     |       69012 Heidelberg
 Fax:     +49-6221-387306                     |       Germany



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