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wanted: profiles for profilesearch

stueber at de.d400.mpg.MPIZ-KOELN.VAX stueber at de.d400.mpg.MPIZ-KOELN.VAX
Thu Oct 7 11:24:11 EST 1993


Hi,
I am currently testing the different efficiences of sequence searches
with either consensus sequences (like those found in PROSITE) or
consensus matrices (like produced by the program profilemake in GCG).

Profilesearch or profilescan has currently about 19 different profiles
available which are distributed together with the GCG package.

Has anybody created further protein profiles with profilemake and
willing to share these profiles?

I have made profiles for actin-binding sites, helix-turn-helix motives,
annexins and globins so far.

Greetings Kurt
stueber at mpiz-koeln.mpg.d400.de



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