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CODON FREQUENCY TABLE

Peter Rice rice at embl-heidelberg.de
Fri Oct 1 12:34:02 EST 1993


In article <CA1B0AA9ACBF2036A6 at vxircm.IRCM.UMontreal.CA>, JOHANNE at IRCM.UMontreal.CA writes:
> Is there any program that would compile a codon frequency preference 
> table usable by GCG program from a list of those codons?

You need a list of CDSs (entry, start and stop position), then
use CODONFREQUENCY in GCG to create the table.

10-20 CDSs may be enough to get you started. You can extend the table later.

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 Peter Rice, EMBL                             | Post: Computer Group
                                              |       European Molecular
 Internet:    Peter.Rice at EMBL-Heidelberg.DE   |            Biology Laboratory
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 Phone:   +49-6221-387247                     |       69012 Heidelberg
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