Maybe I'm missing something trivial...
We have been looking at how to obtain the percent identity between any pair of
protein sequences that have been :
1. aligned with pileup
2. the alignment has been edited with lineup to "improve" it
We used some hacking to get the result, but is there someone around who prepared
a script/program/set of commands that performs this in a single or a few simple
steps?
Thanks for any hint.
Herzog
