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[FIX] OWL & GCG

Alan Bleasby ajb at s-crim1.dl.ac.uk
Thu Dec 30 14:31:20 EST 1993


If you find dbindex falls over with OWL this is due to a limitation in some
GCG versions in a certain parameter (thanks to Mike Hogan for this).

gcg
gcgsupport
getsrc csyslib qsortfile.c

.. now edit the file and change    #define MAXLINENUM 62144      to
                                   #define MAXLINENUM 621440
..

putsrc csyslib qsortfile.c
buildlib csys

and then relink dbindex/seqcat

You also have to make the database type `P' and the format `NBRF' in the
header file. It is also useful to type `dbindex -nomon'. Note that NRL
codes do not have accession numbers so ignore associated warnings.

Rgds

Alan Bleasby
SEQNET/BIOSCI
SERC Daresbury Laboratory
Warrington WA4 4AD
UK

SEQNET is a UK EMBnet node



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