Help. Are protein folding prediction programs available?

Jack Kramer kramer at oj.rsmas.miami.edu
Thu Dec 9 11:34:50 EST 1993

In <9312091353.AA27502 at net.bio.net> CHANG, VIVIAN <VIS at ICBR.IFAS.UFL.EDU> wrote:
>Subj:	protein folding prediction programs
>I am wondering if there are any programs that can predict the protein
>folding and present in a graphics pattern, that are available on
>VAX or for PC.  I would greatly appreciate if you could help in this. 
 A Gopher search for "protein structure" in the JHU gopher gives the
 appended screen.  Searching further thru these resources will provide a 
 good summary of the available software.  Unfortunately we are a long
 way from predicting accurately even the secondary structure of proteins
 so it may be a while until programs can correctly predict the
 tertiary conformation.  PepPlot, PeptideStructure and other GCG
 protein analysis programs are representative of the simpler prediction
 software.  If you would like to participate in more knowledgable 
 and in depth discussions you should forward your question to the protein 
 or information theory bionet groups for LOTS more info.

 Jack Kramer
 University of Florida TREC
                    Internet Gopher+ Information Client v1.2

    Search the Titles of All Items in this Gopher Hole: protein structure

-->  1.  Protein Data Bank ftp Site/
2.  Search and Retrieve entries from the PDB (Protein Data Bank) /
3.  Search the Protein DataBank - PDB <?>
4.  NRL_3D Protein Sequence-Structure Database <?>
5.  NRL_3D Protein Sequence-Structure Database <?>
6.  Search Protein Data Bank Headers (Brookahven) <?>
7.  CCP4 - Programs for Protein Crystallography (U.K.)/
8.  PDBview - View 3D protein Structures (Columbia Un.)/
9.  PDBview - View 3D protein Structures (Columbia Un.)/
10.  ProMod - 3D Protein modeling software (Geneva)/
11.  SAPS - Statistical Analysis of Protein Sequences (Stanford)/
12.  CCP4 - Programs for Protein Crystallography (U.K.)/
13.  ANTHEPROT - Protein Sequence and 3D Structure Analysis (France)/
14.  3D Protein Display and Sequence Analysis for the PC (UIUC)/
15.  RNA Secondary Structure Software (NRC - Canada)/
16.  Kinemages, Mage, Pkin -3D Protein Display for the Mac and PC (UIC)/
17.  Kinemages, Mage, Pkin -3D Protein Display for the Mac and PC (UIC)/
18.  CFB at RUGCH2.CHEM.RUG.NL          ! GENERAL Protein Cryst., U.GRONI... 

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