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[Computational-biology] CFP: IEEE Workshop on High Performance Computing for Big Data Computational Biology (HPC-BCB 2015) Deadline extended: 19th Sept 2015

Sandino Vargas via comp-bio%40net.bio.net (by sathoelduende from gmail.com)
Wed Sep 16 10:14:22 EST 2015


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*IEEE Workshop on High Performance Computing for Big Data Computational
Biology (HPC-BCB 2015)*
https://cs.wmich.edu/hpc-bcb/

In conjunction with

*IEEE International Conference on Bioinformatics and Biomedicine (BIBM)*

*Washington D.C., Nov 9-12, 2015*

Enormous amounts of data is being produced using modern technologies such
as next generation sequencing machines and high-throughput mass
spectrometers. This creates problems in terms of storage, transmission and
computations of these big data sets. In order to process such data in a
timely manner, high-performance computing is becoming an essential
component in system biology, bioinformatics and computational biology.

The goal of this workshop is to provide a forum for high-performance
computing professionals and academics alike to discuss latest research in
HPC solutions to these compute-intensive and data-intensive problems. We
are especially interested in parallel and distributed architectures and
algorithms, cache-oblivious and out-of-core HPC algorithms,
memory-efficient algorithms, large scale data mining and system biology
techniques, and novel approaches for big data, cloud computing, multicores,
GPUs, FPGA's and new accelerators for biological applications. The workshop
will feature submitted papers as well as invited papers and talks from
reputed researchers in the field of high-performance computing and
computational biology.

Authors are invited to submit original unpublished research manuscripts
that demonstrate current research in all areas of high performance
computing, big data and computational biology. Topics of interest include
but are not limited to:


   - Computational genomics and metagenomics
   - Computational proteomics and metaproteomics
   - Peptide identification from big mass spectrometry data
   - Genome annotations via mass spectrometry,
   - Identification of post-translational modifications,
   - Structural genomics via mass spectrometry,
   - Protein-protein interactions,
   - Computational approaches to analysis of large scale mass spectrometry
   data,
   - Exploration and visualization of proteomic data
   - DNA assembly, clustering, and mapping
   - Gene identification and annotation
   - Parallel algorithms for biological sequence analysis
   - Parallel architectures for biological applications
   - Molecular evolution and phylogenetic reconstruction algorithms
   - Next generation sequence data analysis
   - High performance algorithms for systems biology
   - Cloud-enabled solutions for computational biology
   - Big data solutions for systems siology
   - Energy-aware high performance biological applications



*Keynote Speaker*

Srinivas Aluru, Co-Director, Strategic Initiative in Data Engineering and
Science, Georgia Tech., USA


*Submission guidelines*

Research Papers reporting on original theoretical and experimental work in
all areas of high-performance computing and bioinformatics & computational
biology are sought. Surveys and opinion pieces of recent results and
directions are also welcome. To submit a paper, upload a PDF copy of the
paper here. Submitted manuscripts may not exceed 8 page IEEE 2-column
format using 10-point size font on 8.5x11 inch pages ( IEEE conference
style), including figures, tables, and references. All papers will be
extensively peer-reviewed. All accepted papers will appear in IEEE Xplore
Digital Library.


*Important Dates*


   - *Due date for full workshop papers submission*: Sept 19, 2015
   - *Notification of paper acceptance to authors*: Sept 30, 2015
   - *Camera-ready of accepted papers*: Oct 17, 2015
   - *BIBM and its Workshops*: Nov 9-12, 2015


*Workshop Chair*

Fahad Saeed <http://www.saeedfahad.com/>
Department of Electrical & Computer Engineering and
Department of Computer Science,
Western Michigan University
Kalamazoo, MI, 49008-5466
Phone: 269-276-3156
Email: fahad.saeed from wmich.edu

*Program Co-Chairs*

Ajay Gupta <https://www.cs.wmich.edu/gupta/>
Department of Computer Science,
Western Michigan University
Kalamazoo, MI, 49008-5466
Phone: 269-276-3104
Email: Ajay.Gupta from wmich.edu

Elise DeDoncker <https://cs.wmich.edu/elise/>
Department of Computer Science,
Western Michigan University
Kalamazoo, MI, 49008-5466
Phone: 269-276-3101
Email: Elise.Dedoncker from wmich.edu

*Program Committee*


   1. Trilce Estrada (Univ. of New Mexico, USA)
   2. Ananth Kalyanaraman (Washington State University, USA)
   3. Ashfaq Khokhar (Illinois Institute of Technology, USA)
   4. Manish Parashar (Rutgers University, USA)
   5. Sanguthevar Rajasekaran (University of Connecticut, USA)
   6. Huzefa Rangwala (George Mason University, USA)
   7. Mohammad Asad Rehman Chaudhry (University of Toronto, Canada)
   8. Tiffani Williams (Texas A&M University, USA)
   9. Alex Zelikovsky (Georgia State University, USA)
   10. Jaroslaw Zola (Univversity of Buffalo, USA)
   11. Saad Sheikh (Bloomberg Inc., USA)
   12. Paul Messina (Argonne National Lab, USA)


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