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[Computational-biology] Re: Nucleotide Pairing

darked via comp-bio%40net.bio.net (by darek.kedra from gmail.com)
Thu Jan 10 19:55:34 EST 2008

Richard Horler wrote:
> Hi
> I was wondering if anyone knows of a software which would allow me to
> compare sequences to look for the maximum RNA:RNA base pairing. i.e. if
> I input two RNA sequences the program could run through all possible
> alignments and determine which is most stable i.e. most cognate base
> pairs preferably including the none standard Watson Crick base pairs.
> Richard

I am not sure if this will answer your questionn but you may try as
starting point:


and RNAhybrid:


Darek Kedra

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