SRS 5.1.0 and EMBL

Brad Johnson bjohnson at got.wedgie.org
Sun Sep 24 09:28:09 EST 2000

Hello all...

I recently grabbed the current EMBL data files off ftp.expasy.ch and tried
to index them using SRS 5.1.0.  Needless to say it took quite a bit of
time!  Once I was finished, however, this was the output of srscheck:

++++++> must build index "FtKey" for EMBL, does not exist
++++++> must build index "FtQualifier" for EMBL, does not exist
Segmentation fault (core dumped)

I'm using the default embl.* icarus files that come with SRS 5.1.0 set up
to use standard EMBL and not GCG Embl.  I built indexes for EMBLNEW just
fine.  If I try to run srsupdate to finish building the indexes, I get no
output back whatsoever (as if nothing else needs to be done).  If I
attempt to run any getz's on the EMBL database, I get a seg fault.  Has
anyone else run into this problem?  Should I just upgrade to SRS6?  Any
good way around this?  I'm running on a Sun E250 with 2 GB of RAM, 4 16 GB
hard drives and 2 72 gig hard drives.

Thanks for any help you can provide...

Brad Johnson


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