I recently grabbed the current EMBL data files off ftp.expasy.ch and tried
to index them using SRS 5.1.0. Needless to say it took quite a bit of
time! Once I was finished, however, this was the output of srscheck:
++++++> must build index "FtKey" for EMBL, does not exist
++++++> must build index "FtQualifier" for EMBL, does not exist
Segmentation fault (core dumped)
I'm using the default embl.* icarus files that come with SRS 5.1.0 set up
to use standard EMBL and not GCG Embl. I built indexes for EMBLNEW just
fine. If I try to run srsupdate to finish building the indexes, I get no
output back whatsoever (as if nothing else needs to be done). If I
attempt to run any getz's on the EMBL database, I get a seg fault. Has
anyone else run into this problem? Should I just upgrade to SRS6? Any
good way around this? I'm running on a Sun E250 with 2 GB of RAM, 4 16 GB
hard drives and 2 72 gig hard drives.
Thanks for any help you can provide...