Dr Thon de Boer <tdeboer at hgmp.mrc.ac.uk> writes:
> I'm trying to index the FSSP database and i get a strange 'error'
> message when I do a SRSCHECK -l FSSP :
>> library "FSSP" had previously 1531, now 1627 entries
> ======> must build indices for library "FSSP"
>> When I then do a SRSUPDATE and check the database again, I get the same
> error.
> I've even tried deleting the indices all together and the error still
> comes up (after the second SRSCHECK that is).
>> Does anyone know what is going on here ?
>> I think the numbers come from a descrepancy between the number of keys
> indexed and the number of entry references, since the two numer (1531
> and 1627) come up in the info bit on the FSSP page.
Something to do with 96 entries failing to parse correctly. I have a
fix in our fssp.is file that should work (but we have not updated FSSP
recently). DSSP sometimes suffers from the same problems.
Or it could be a file naming problem. Check fssp.i to see what file
name wildcard you are using and check what that finds in the FSSP data
directory.
--
----------------------------------------------------------------------
Peter Rice | Informatics Division, The Sanger Centre,
E-mail: pmr at sanger.ac.uk | Wellcome Trust Genome Campus,
Tel: (44) 1223 494967 | Hinxton, Cambridge, CB10 1SA, England
Fax: (44) 1223 494919 | URL: http://www.sanger.ac.uk/Users/pmr/
