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PIR sequences in SRS

Jean-Marc Plaza plaza at infobiogen.fr
Wed Jan 27 04:01:23 EST 1999


Hello,

there is a parsing problem for PIR sequences (pirref-pirseq)
where the composition is not respected.

In pir1.seq data we have:
>P1;CCDG
cytochrome c - dog
GDVEKGKKIFVQK(C.A.Q.C.H.T.V.E)KGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENP

KKYIPGTKMIFAGIKKTGERADLIAYLKKATKE*

but in SRS parentheses are removed:

>P1;CCDG

GDVEKGKKIF VQKC.A.Q.C .H.T.V.EKG GKHKTGPNLH GLFGRKTGQA PGFSYTDANK
NKGITWGEET LMEYLENPKK YIPGTKMIFA GIKKTGERAD LIAYLKKATK E*

Thanks for your help in advance

--
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Jean-Marc PLAZA
INFOBIOGEN - CNRS
7, rue Guy Moquet BP8 94801 VILLEJUIF Cedex, France
tel: +33 45 59 52 39  fax: +33 45 59 52 50
e-mail: plaza at infobiogen.fr
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