Heikki Lehvaslaiho <heikki at ebi.ac.uk> writes:
> Peter Rice wrote:
> > The common name(s) do not seem to be indexed. Can they be added?
>> They are indexed but since there are 10 different fields that contain
> other than the accepted scientific name, there are no specific search
> fields for all of them. You can search them using AllText field.
So, for example, how do I search TAXONOMY for "human" ?
% getz '[taxonomy-all:human]' -e
... returns nothing ...
Looks to me like "alltext" is not indexed. Nor does it show the common names.
% getz '[taxonomy-spc:homo sapiens]' -e
ID : 9606
PARENT ID : 9605
RANK : species
GC ID : 1
MGC ID : 2
SCIENTIFIC NAME : Homo sapiens
PREFERRED COMMON NAME : human
COMMON NAME : man
//
% getz '[taxonomy-spc:homo sapiens]' -t
RANK : species
GC ID : 1
MGC ID : 2
SCIENTIFIC NAME : Homo sapiens
--
----------------------------------------------------------------------
Peter Rice | Informatics Division, The Sanger Centre,
E-mail: pmr at sanger.ac.uk | Wellcome Trust Genome Campus,
Tel: (44) 1223 494967 | Hinxton, Cambridge, CB10 1SA, England
Fax: (44) 1223 494919 | URL: http://www.sanger.ac.uk/Users/pmr/
