taxonomy database ?

Peter Rice pmr at sanger.ac.uk
Tue Nov 17 11:19:34 EST 1998

Heikki Lehvaslaiho <heikki at ebi.ac.uk> writes:
> Peter Rice wrote:
> > So, for example, how do I search TAXONOMY for "human" ?
> > 
> > % getz '[taxonomy-all:human]' -e
> Works for me. There must still be some minor discrepancy between Sanger
> and EBI files.

taxonomy.i and taxonomy.is are identical.

Our taxonomy.dat is the one on the EBI ftp server (dated 5-Nov)

What else could be different in the way "alltext" can be defined?

Aha - srsgen.i has lots of places with "group:@DF_ALL" added.

Still not enough though - Hmmm. EBI has more keys under "taxon"
indexed on 9-Nov. Searching taxon at EBI lets me find "human" but at
Sanger it does not.

Does it still work if you srssection and reindex at EBI with the
current taxonomy icarus files?

Peter Rice                | Informatics Division, The Sanger Centre,
E-mail: pmr at sanger.ac.uk  | Wellcome Trust Genome Campus,
Tel: (44) 1223 494967     | Hinxton, Cambridge, CB10 1SA, England
Fax: (44) 1223 494919     | URL: http://www.sanger.ac.uk/Users/pmr/

More information about the Bio-srs mailing list

Send comments to us at biosci-help [At] net.bio.net