IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

Features in genbank or Embl

Jean-Marc Plaza plaza at infobiogen.fr
Tue Jun 9 04:47:24 EST 1998

Hello !

I found an error message in severals SRS Sites about
CDS and map_peptide features in GenbanK or EMBL.
It concerns the "join " function which contains accession number.
For instance in embl-id:HSINSR24
 the feature mat_peptide or CDS shows the warning
!!!Wrong location definition

ID   HSINSR24_3; parent: HSINSR24
AC   M32972;
FT   mat_peptide
FT                   M32825:318..466,M32826:188..332,M32827:189..403,
FT                   M32828:277..403,M32829:124..374,M32830:106..273,
FT                   M32831:187..388,M32832:123..158,M32833:161..435,
FT                   M32834:93..232,M32835:85..244,M32836:92..194,
FT                   M32837:261..328,M32838:136..380,M32839:117..227,
FT                   /codon_start=1
FT                   /note="G00-119-352"
FT                   /gene="INSR"
FT                   /map="19p13.3-p13.2"
FT                   /product="insulin receptor"
!!!Wrong location definition

Thanks in advance for your help

Jean-Marc PLAZA
7, rue Guy Moquet BP8 94801 VILLEJUIF Cedex, France
tel: +33 45 59 52 39  fax: +33 45 59 52 50
e-mail: plaza at infobiogen.fr

More information about the Bio-srs mailing list

Send comments to us at biosci-help [At] net.bio.net