As a newcomer to SRS I ran into problems building the indices for
GenBank (GCG format).
I'm using SRS 5.1.0 on IRIX 6.4. The GenBank release is 104 (12/97), as
obtained from GCG.
I tried to modify genbank.i to switch from EMBL to GCG format.
srsbuild -info genbank seems to work fine.
srsbuild -w genbank gives the following:
> ...processing GENBANK
> ...processing /u04/gcggenbank/gb_ba.ref
> ...processing /u04/gcggenbank/gb_ba.seq
> Entry name mismatch: ref=A16SRRNA, seq=
>But I can't see anything wrong with the file headers:
> % head /u04/gcggenbank/gb_ba.ref
> >>>>A16SRRNA 7/97
> X87617 Actinomycete (genus unknown) 16S ribosomal RNA. 7/97
>> ....
>> % head /u04/gcggenbank/gb_ba.seq
> >>>>A16SRRNA 7/97 2BIT Len: 1497
> X87617 Actinomycete (genus unknown) 16S ribosomal RNA. 7/97
>
This problem did not occur when building the SwissProt indices.
Any suggestions? Thanks!
Ton Rullmann
MDI-RIM group, Organon, the Netherlands
