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srs5.1 : bug(?)

Peter Rice pmr at sanger.ac.uk
Fri Feb 13 05:47:42 EST 1998


Ramu Chenna <chenna> writes:

> In srs5.1  (OSF)
> 
> I get the following message when I try srscheck
> 
> ++++++> must rebuild index "Comment" for TFCLASS, is not up to date
> e__allocfail, insufficient memory - error during malloc
> could not allocate "id-index-object"

The latest Transfac 3.3 release includes updated Icarus files.
The original versions had some minor problems, but I have updated them
and GBF probably now provide the corrected ones. If not, you can
pick up the Sanger versions from http://www.sanger.ac.uk/srs5/

These are fine for me, also on OSF.

... though the only change in tfclass.i or tfclass.is that could
affect you is an increased maxNameLen to 20 in tfclass.i


-- 
----------------------------------------------------------------------
Peter Rice                | Informatics Division, The Sanger Centre,
E-mail: pmr at sanger.ac.uk  | Wellcome Trust Genome Campus,
Tel: (44) 1223 494967     | Hinxton, Cambridge, CB10 1SA, England
Fax: (44) 1223 494919     | URL: http://www.sanger.ac.uk/Users/pmr/




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