srs5.1 : bug(?)

Peter Rice pmr at sanger.ac.uk
Fri Feb 13 05:47:42 EST 1998

Ramu Chenna <chenna> writes:

> In srs5.1  (OSF)
> I get the following message when I try srscheck
> ++++++> must rebuild index "Comment" for TFCLASS, is not up to date
> e__allocfail, insufficient memory - error during malloc
> could not allocate "id-index-object"

The latest Transfac 3.3 release includes updated Icarus files.
The original versions had some minor problems, but I have updated them
and GBF probably now provide the corrected ones. If not, you can
pick up the Sanger versions from http://www.sanger.ac.uk/srs5/

These are fine for me, also on OSF.

... though the only change in tfclass.i or tfclass.is that could
affect you is an increased maxNameLen to 20 in tfclass.i

Peter Rice                | Informatics Division, The Sanger Centre,
E-mail: pmr at sanger.ac.uk  | Wellcome Trust Genome Campus,
Tel: (44) 1223 494967     | Hinxton, Cambridge, CB10 1SA, England
Fax: (44) 1223 494919     | URL: http://www.sanger.ac.uk/Users/pmr/

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