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genbank 103 with SRS5

Antoine de Daruvar daruvar at lion-ag.de
Thu Oct 30 05:21:10 EST 1997


> > we have some troubles with genbank 103 about indexing
> > FeatureQualifier (ftq) with SRS5.05
> > The two first indexing steps are ok:
> > srsbuild GENBANK -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> > srsbuild GENBANK -c -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> >
> > but the step of murging index partitions to a single index make
> > a core dumped
> > srsbuild GENBANK -m -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> > ---------------------------------------------------
> 
> Might this be caused by a constant determining the maximum number
> of entries associated with a key? The ftq key "dbx_ref" appears
> to be related to 2254812 entries. A grep for 2000000 in the
> source code did show a few constants set to that value, but
> none seemed to be related to this (quickly judged from there
> names/files) - but maybe the SRS-team can tell us more.
> 

I am having also this problem with other databases and keys (with less
then 2000000 ref). What makes it tricky is that the dump is not
systematic....

I am using srs 5.05 on SGI origin 2000

Antoine --
 
Antoine de Daruvar
LION bioscience AG
Im Neuenheimer Feld 517
D-69120 Heidelberg
eMail	daruvar at lion-ag.de
WWW	http://www.lion-ag.de




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