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genbank 103 with SRS5

Martin Hilbers mph at dl.ac.uk
Mon Oct 27 05:16:47 EST 1997


Jean-Marc Plaza wrote:
> 
> Hello,
> we have some troubles with genbank 103 about indexing
> FeatureQualifier (ftq) with SRS5.05
> The two first indexing steps are ok:
> srsbuild GENBANK -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> srsbuild GENBANK -c -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> 
> but the step of murging index partitions to a single index make
> a core dumped
> srsbuild GENBANK -m -f ' ftq' -xdir 'SRSINX:' -odir 'SRSINX:' -s 'unix'
> 
> need help
> 
> Regards,
> 
> Jean-marc
> --
> ---------------------------------------------------
> Jean-Marc PLAZA
> INFOBIOGEN - CNRS
> 7, rue Guy Moquet BP8 94801 VILLEJUIF Cedex, France
> tel: +33 45 59 52 39  fax: +33 45 59 52 50
> e-mail: plaza at infobiogen.fr
> ---------------------------------------------------


Might this be caused by a constant determining the maximum number
of entries associated with a key? The ftq key "dbx_ref" appears
to be related to 2254812 entries. A grep for 2000000 in the 
source code did show a few constants set to that value, but
none seemed to be related to this (quickly judged from there
names/files) - but maybe the SRS-team can tell us more.

Cheers,

Martin


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