hi tim,
in fact we encountered this problem ourselves. We added to the blast
output entry
the field sequence that is taken from the "subject" sequence, the
sequence from
the sequence databank that blast found to be similar to the query
sequence. This field
enables to associate "clustalw" and all other methods to blast entries.
We took a
slightly different strategy in 5.1. The field "ProtSequence" is now
linked to the applications and not $libformat. This means as soon as a
databank has a field "ProtSequence" methods on that field apply for
entries of the databank
regards
thure
...there will be at least a prerelease available by the end of november
