Hi All
There appears to be a bug in the embl databases under srs5. I have
included an example below ... the problem is present on other sites. It
also appears to be database format (GCG/Native) independent (though the
error message varies between formats).
Example
Via the web
select new srs session
select embl and emblnew
use these ID's as your query SMU75476|SMD031
check the boxes for the three sequences
select save button
select save complete entry
select save
Errors Messages are:
www.sanger.ac.uk native embl format
says "not possible to write to token table "sequence"
worf.molbiol.ox.ac.uk gcg embl format
says syntax error production `seq' :
|àØÿÿÿÿÿÿ>>>>SMD031 5/97 2BIT Len: 2195|
.....................................^
no match with |^[0-9]+|
www.ebi.ac.uk gcg embl format
says syntax error
production `seq' :
| 2195|
.....................................^
no match with |^[0-9]+|
Via the web
select new srs session
select embl and emblnew
use these ID's as your query SMU75476|SMD031
check all three sequences
select save button
select save complete entry
select save
From the command line:
getz -e '[libs={embl emblnew}-id:SMU75476|SMD031]'
Generates an error .... But
getz -e '[libs={ emblnew}-id:SMU75476|SMD031]'
getz -e '[libs={embl }-id:SMU75476|SMD031]'
work fine ...
john
