I am currently trying to link in the results of FASTA and
SCANPS(smith-waterman) to the SRS server at the EBI.
However the format of the hits does not give the data library from which
the sequence was derived only the name and and the accession number, eg
...
The best scores are: initn init1 opt z-sc
E(473814)
BB L32145 Borrelia burgdorferi C62.5 heat ( 236) 1180 1180 1180
892.7 0
...
therefore,
http://<ipname>/srs5bin/cgi-bin/wgetz?[database-id:id]+-e
will not work as it goes directly to a single entry.
I have tried incorporating the query that is returned when I do the
search within a live SRS session eg
Query "[libs={embl emblnew}-AccNumber: L32145*] " found 1 entries
http://srs.ebi.ac.uk:5000/srs5bin/cgi-bin/wgetz?[libs={embl
emblnew}-AccNumber: L32145*]+-e
However this returns arguments missing.
I have tried variations on this to no avail.
Is it possible?
Aengus
--
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Aengus Stewart aengus.stewart at icrf.icnet.uk
Bioinformatics Support Tel: +44 (0)171 269 3679
Imperial Cancer Research Fund
Lincoln's Inn Fields, Holborn, London, WC2A 3PX, UK
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