I have a problem with the output of blast application
We use blast 1.4.9MP.
the message error for the blast research is :
file could not be opened
"blast_nam.inx"
Information:
no entries found, query: "[blast-name:temp]"
but the script file ans the result is built:
blast.csh
blast_id.dbs
temp.blast
tmp.seq
user.par
Is it a problem of prasing blast output of 1.4.9MP?
Regards,
Jean-Marc
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more temp.blast
BLASTP 1.4.9MP [26-March-1996] [Build 14:46:45 May 2 1997]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers,
and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol.
215:403-10.
Query= 104K_THEPA
(924 letters)
Database: /env/infobiogen/db/swissprot/SPblast/sprot
59,021 sequences; 21,210,388 total letters.
Searching..................................................done
WARNING: -hspmax 100 was exceeded with 18 of the database sequences,
with as
many as 303 HSPs being found at one time.
Smallest
Sum
High
Probability
Sequences producing High-scoring Segment Pairs: Score
P(N) N
sw|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN. 4916
0.0 1
sw|P19246|NFH_MOUSE NEUROFILAMENT TRIPLET H PROTEIN (200... 112
7.9e-13 3
sw|P16884|NFH_RAT NEUROFILAMENT TRIPLET H PROTEIN (200 K... 100
3.5e-12 4
sw|P14918|EXTN_MAIZE EXTENSIN PRECURSOR (PROLINE-RICH GL... 115
2.4e-11 2
sw|P24152|EXTN_SORVU EXTENSIN PRECURSOR (PROLINE-RICH GL... 109
2.5e-11 3
sw|Q00451|PRF1_LYCES 36.4 KD PROLINE-RICH PROTEIN. 101
3.5e-11 4
...
--
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Jean-Marc PLAZA
INFOBIOGEN - CNRS
7, rue Guy Moquet BP8 94801 VILLEJUIF Cedex, France
tel: +33 45 59 52 39 fax: +33 45 59 52 50
e-mail: plaza at infobiogen.fr
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