Hi,
I am trying to index a new data bank for our srs
server and I am not sure about the proper way to
do so. My bank is a bank of links and an entry
looks like
" LNK vgl: 1 gdb-gbk link GDB_gene and Genbank_sequence
" GO1 gdb: 118727 NPPA natriuretic peptide precursor A
" GO2 gbk: M54951 HUMANFZ2 Human atrial natriuretic factor gene, 3'
flank.
" COM /score=0.56 /author=genXref v0.9 /date=24-Oct-1995
" //
LNK is the link field
GO1 and GO2 are genomic objects 1 and 2
COM are comments on that field
And the identifier of a data bank object is
made of a mnemonic (-3 letters, eg. gbk is
Genbank,) a ':', a space and an unique id
(uid).
The main index should be on the number following
"LNK vgl:"
I want to have the following stuffs indexed:
- the database-ids which are taken from
LNK, GO1 and GO2 fields ('vgl: 1',
'gdb: 118727' and 'gbk: M54951')
- keywords taken from GO1 and GO2 (but excluding
the previous database-id)
In genbank, I saw that two tokens are taken from the
LOCUS field (locus name and date) but couldn't really
figure out how this works.
Does it work because \find="" on the #libformat of date
or (and) because a function (f=@F_SAVEDATEGB) is called
to transmogrify the date in the locus parser.
By the way, how do I create my function. Just add the code
in srsbuild.c and compile, section and update everything ???
I'd REALLY appreciate any help. A pointer on anything
similar will do.
I thank you in advance.
Frederic.
PS: we have a srs for development on our site.
You can check what I have done so far at
http://www.infobiogen.fr/srsdev/srsc/
in virgil.
PS 2: sorry but the <reply to> of my previous post was wrong.
Hope it did not bother any of you. Does it explain why I got no
response ;-)
PS3: I forgot the subject on the previous one. So I repost it.
Not sure if this is good Internet usage .
