The format of the TRANSFAC database (file factor.dat) has changed slightly
in release 2.4.
The database cross-reference lines now are:
DR EMBL: M55619; SCACE2; g.
DR SwissProt: P21192; ACE2_YEAST.
DR PIR: TWBYA2; TWBYA2.
so the transfac.sdl file had to parse these as:
linkseq = ('EMBL' ':' accno <wrt c=@TFFACTOR_EMBL_REF>) |
('PIR' ':' accno <wrt c=@TFFACTOR_PIR_REF>) |
('SWISSPROT' ':' accno <wrt c=@TFFACTOR_SWISSPROT_REF>);
(note: ';' changed to ':' and "-" removed from "SWISS-PROT")
--
------------------------------------------------------------------------
Peter Rice | Informatics Division
E-mail: pmr at sanger.ac.uk | The Sanger Centre
Tel: (44) 1223 494967 | Hinxton Hall, Hinxton,
Fax: (44) 1223 494919 | Cambs, CB10 1RQ
URL: http://www.sanger.ac.uk/~pmr/ | England
