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[Bio-software] Converting Clustal alignment to a single consensus sequence

Duncan Clark via bio-soft%40net.bio.net (by blackhole from abuse.plus.com)
Fri Jan 15 11:50:27 EST 2010

Hi Folks,

Does anyone know of software or a web page that will take a Clustal .aln 
file and simply spew out a single consensus sequence?

I have an alignment of thirty 2000bp nucleotide sequences and ideally 
want to simply stick a single letter consensus sequence into an 
isothermal primer design program.

At the moment we are generating the consensus sequence by hand but it's 
a pain to do!


I love deadlines. I especially like the whooshing noise they make as
they go flying by.

Duncan Clark
GeneSys Ltd.

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