[Bio-software] short-reads assemble and mapping

[zhuocheng Hou]

Hi Everyone,

I am seeking for software which can assembl short-reads (<60bp) and also can
use draft genomic data to pileup data. As I know, MAQ, Velvet, ELAND etc
didn't use draft genome data. I guess we can get the better assembl results
by incoporating the short-reads and genomic data. Can anyone give me some
clues about these kinds of software?

Thanks,
Zhuocheng