Hi Shobit,
To locate or search for any kind of such patterns there are online tools
available.
There are tools which take in the pattern as a regular expression and looks
for the pattern in the input sequence.
You can use DREG (http://bioinfo.hku.hk/EMBOSS/) This is a part of NUCLEIC
MOTIFS in the EMBOSS package.
The program requires 2 input.
1. Input Sequence: The user's sequence
2. Regular expression pattern: CA[CG][CG]TG
The output will locate the positions of the E-box in the input sequence.
I hope this will serve the purpose.
On 6/24/08, Googlefan <indiasweden from gmail.com> wrote:
>> Hello, I want to analyse E-BOX ( CANNTG) motif in my sequence. Could
> you please tell me any tool to analyse it.
> Thanks
> Shobhit
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