[Bio-software] "state-of-the-art" software for calculating distances

Jan Kosinski via bio-soft%40net.bio.net (by kosa At genesilico.pl)
Fri Jan 5 06:18:27 EST 2007


I am looking for a best (fast but robust, incorporating wide spectrum of 
models and parameters ) software
for calculating distances between protein sequences. To this end I was
using vanilla and its v_mldist. However, it does not allow to use
proportion of invariable sites parameter in the substitution model.
Could you recommend me anything?

Best regards,
Jan Kosinski

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