On Apr 5, 12:41 am, ehs <bowsie... from nc.rr.com> wrote:
> I have been trying to cross_match some sequences against themselves to try to
> cluster sequences. However, cross_match only returns one match per sequence,
> when I know there should be multiple matches for many of them.
>> Does anyone out there know if there is a flag which reports back ALL of the
> matches found by crossmatch, rather than just the best match?
> View this message in context:http://www.nabble.com/cross_match---multiple-matches--tf3528872.html#...> Sent from the Bio.net - Bio-soft mailing list archive at Nabble.com.
1. what kind of sequences are you trying to cluster?
2. why is phrap not up to the task?