Over the last few years we've been developing a variety of tools and
databases for analyzing viral genomes.
Many of the tools also work for bacterial genomes.
Although there is significant integration between our databases of
genomes and the tools, most can be used independently.
Pretty much everything is java based and therefore platform independent.
VOCs - database system
JDotter - interface to Dotter
BBB - Multiple sequence editor + lots more
GATU - genome annotator (uses a reference genome to transfer
annotations to new genome, writes GenBank files)
VGO - genome viewer + analysis
ReHAB - management of BLAST search results
JIPS - management of Interpro searches
+ lots more
Also check out the new blog.... http://www.biodirectory.com/
uptons_blog.html
Chris Upton Ph.D. Associate Professor
Biochemistry and Microbiology Tel. 250-721-6507
University of Victoria Fax 250-721-8855
P.O. Box 3055 STN CSC
Victoria, BC V8W 3P6
Canada
web.uvic.ca/~cupton
www.virology.ca
