I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP analysis.
I wish to parse and extract SNP associated information from the output (textual mulitple sequence alignment) of Polybayes program.
Alternatively I am trying out the possibilities of converting the polybayes alignment output into any standard multiple alignment format, so that I can able to use other SNP analysis programs that read multiple sequence alignment files as input.
I wish to use your parser script or any bioperl / biojava module.
Does anyone know or use any bioperl /biopython /biojava module ?
I shall be grateful if you could kindly provide me some tips or additional information on this.
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