New Fgenesh genefinding parameters for Chicken and Xenopus genome annotation
Softberry releases genefinding parameters for Chicken and Xenopus.
New parameters can be used with FGENESH, FEX and BESTORF and FGENESH+,
FGENESH_C and FGENESH-2 programs.
The accuracy of new parameters with FGENESH is 95-97% on the nucleotide level
with prediction of 95-97% exons and 91-93% exactly predicted exons.
You can find genes in your sequence at:
http://www.softberry.com/berry.phtml?
topic=fgenesh&group=programs&subgroup=gfind
These parameters are added to the set of Fgenesh suit gene-finding parameters
covering most model organisms:
Human, Mouse, Chicken (Aves), Frog (Xenopodinae,) Fish,
Drosophila, Anopheles gambiae, C.elegans, Brugia malayi (parasitic
nematode),
Plasmodium falciparum ,
Dicot plants (Arabidopsis), Nicotiana tabacum, Monocot plants (Corn, Rice,
Wheat, Barley)
Medicago (legume plant), Algae
Aspergillus, Coprinopsis cinerea, Cryptococcus neoformans, Fusarium
graminearum,
Histoplasma (fungus), Magnaporthe, Ustilago, Phanerochaete chrysosporium
(white rot),
Schizosaccharomyces pombe, Neurospora crassa
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