I am a software developer in a microbiology lab.
EMBOSS has functions such as DREG, PREG to do the regular expression search of
a nucleotide sequence. Since most of our own softwares are programmed in JAVA,
I am trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and
FUZZPRO so that we can import these ambiguity sequence searching functions
into our own softwares.
Thanks for any help!
Biochemistry and Microbiology
University of Victoria
adelej at uvic.ca