> course, a lot of features of the HTML output are not available in text
> format). So, I wonder whether there is something like a software that
> allows creating an annotatable and analyzable database of BLAST
> results pages containing all the information of the HTML output pages.
If you can use the standalone version of blast (available on the ftp
sit of the NCBI) you can use to eport the ouput as an XML format
(option -m 7). Such a format allow you to manipulate the output in any
way you want using an XSLT transformation stylesheet.
see for BLAST ftp://ftp.ncbi.nih.gov/blast/executables/
see for XML/XSLT: http://www.w3c.org
hope it helps
Pierre Lindenbaum
