On 17 Jun 2003 15:35:06 +0100
peter_frankde at yahoo.de (Peter Frank) wrote:
> In journal articles I saw multiple sequence alignments which were
> heavily "annotated" with text and symbols like boxes and arrows. It
> was more than what is possible with software like GeneDoc.
Try "alscript". It's a bit complex but it should let you
mark up an alignment to your heart's content.
mathog at caltech.edu
Manager, Sequence Analysis Facility, Biology Division, Caltech