Is there Java implementation of regular expression search of sequence

Dion Whitehead dwhitehe at REMOVEMEGenetik.Uni-Bielefeld.DE
Tue Jun 17 09:33:48 EST 2003

adelej wrote:
> I am a software developer in a microbiology lab. 
> EMBOSS has functions such as DREG, PREG to do the regular expression search of 
> a nucleotide sequence. Since most of our own softwares are programmed in JAVA, 
> I am trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and 
> FUZZPRO so that we can import these ambiguity sequence searching functions 
> into our own softwares.
> Thanks for any help!
> Adele
> Biochemistry and Microbiology
> University of Victoria
> BC, Canada
> adelej at uvic.ca
> ---
Java now has the REGEX package in its standard library, which can do 
regular expressions.



More information about the Bio-soft mailing list

Send comments to us at biosci-help [At] net.bio.net