I need a good ORF (Opening Reading Frame) Finder. I am going to
use the full-length cDNA sequences from MGC and find there corresponding
proteins. Do you know any good one for this purpose? I am aware of ESTScan
and the one at NCBI. However, the former probably is an overkill because
the MGC sequences are supposedly of high quality. The one at NCBI doesn't
seem to have a Standalone version (if you know where it is, can you
tell me where to download it?). If you know other good ORF finders, please
let me know too. I am also curious how MGC finds ORFs. It doesn't seem to
be documentation at their site...
Thanks in advance.