phrap and clustering

Ketil Malde ketil at ii.uib.no
Fri Dec 19 14:27:27 EST 2003


I sometimes see references to EST clustering being done with Phrap.
However, it seems Phrap only outputs contigs, and not the actual
clustering (i.e., the groups of sequences originating from one gene,
or alternatively, matching one transcript).  Is this at all possible
with Phrap?  What about the other assemblers (CAP3, TIGR)?

If I haven't seen further, it is by standing in the footprints of giants

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