What happened is that you got confused. Take another look at
$ENV{'BLASTDB'}. It is defined as "/home/amir/Blast/data", however, in
the error_log file the path is "/home/amir/Blast/Db/". The last
directory in the error file is "Db" and not "data".
Olga.
amir orlev wrote:
>I've been trying to run blastall from a CGI script on a Linux (RH 7.2)
>machine. The blastall program and Apache web server are on the same
>machine.
>I can run the program via perl scripts or from the command line
>without problem. But when I create the cgi script and execute it from
>the web page I get the error message in my httpd error_log file :
>>[blastall] WARNING: eyal: Could not find index files for database
>/home/amir/Blast/Db/gbhuman.fa
>>I've already used formatdb to create these index files. The correct
>path is given in the CGI script:
> system "/usr/local/bin/blastall -p blastp....."
>>The .ncbirc file has been created with appropriate paths for Data.
> .
> .
> [NCBI]
> Data=/home/amir/Blast/data
>>To make sure that the paths are correct, I defined the 2 environment
>variables as follows:
>>$ENV{'BLASTDB'} = "/home/amir/Blast/data";
>$ENV{'NCBI'} = "/home/amir";
>>How can I fix the problem ??? can someone help me ?
>I will appreciate your help ...
>>Thank, Amir.
>>
--
Olga Belenkiy
Molecular Genetics dept. | olga.belenkiy at weizmann.ac.il
Weizmann Institute of Science, | fax: ##972 (8) 934 4108
POBox 26, Rehovot 76100, Israel. | tel: ##972 (8) 934 4911
http://bioinformatics.weizmann.ac.il/~olgab
