DNA pattern search algorithm

[Gary Williams]

In article <3cb40a08 at news.uni-ulm.de>,
Ladislav Burysek  <ladislav.burysek at medizin.uni-ulm.de> wrote:
>Does anybody know about an algorithm (software) able to find repeats in DNA?
>
>Thank you for any hint.


Try the GenomeWeb DNA Repeats page:
http://www.hgmp.mrc.ac.uk/GenomeWeb/nuc-repeats.html

Try also einverted, palindrome, equicktandem and etandem in EMBOSS:
http://www.uk.embnet.org/Software/EMBOSS/
http://www.uk.embnet.org/Software/EMBOSS/Apps/equicktandem.html
http://www.uk.embnet.org/Software/EMBOSS/Apps/etandem.html
http://www.uk.embnet.org/Software/EMBOSS/Apps/einverted.html
http://www.uk.embnet.org/Software/EMBOSS/Apps/palindrome.html

Regards,
Gary 

Gary Williams               Tel: +44 1223 494522  Fax: +44 1223 494512
mailto:G.Williams at hgmp.mrc.ac.uk            http://www.hgmp.mrc.ac.uk/
Bioinformatics,MRC HGMP Resource Centre,Hinxton,Cambridge, CB10 1SB,UK